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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Yadier Molina | 3rd | Brent Cordell | 5th | 2nd |
| First Basemen | Morgan Ensberg | 29th | Javier Brito | 18th | 28th |
| Second Basemen | Freddy Guzman | 30th | Willie James | 2nd | 25th |
| Third Basemen | Eric Chavez | 9th | Matt Craig | Tied for 24th | 12th |
| Shortstops | Bobby Crosby | 10th | Joe Shallenberger | 16th | 11th |
| Left Fielders | Eduardo Arredondo | 25th | Eduardo Arredondo | 7th | 21st |
| Center Fielders | Willy Taveras | 12th | Adam Jones | 18th | 10th |
| Right Fielders | Michael Cuddyer | 14th | Juan Senreiso | 7th | 11th |
| Starting Pitchers | Jorge De La Rosa | 22nd | Paul Mildren | 10th | 22nd |
| Relievers | Cla Meredith | 20th | Sergio Romo | 2nd | 15th |
| Closers | Jesse Crain | 18th | Brian Duensing | Tied for 22nd | 18th |
